Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5855098-SRR5855099/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  123,990,178
 Normal Paired: 102,885,887 (82.98%)
 Chimeric Paired: 4,599 (0.00%)
 Chimeric Ambiguous: 9,388 (0.01%)
 Unmapped: 21,090,304 (17.01%)
 Ligation Motif Present: 15,970 (0.01%)
Alignable (Normal+Chimeric Paired): 102,890,486 (82.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-03T04:52:50,003]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 88,403,745 (71.30%)
PCR Duplicates: 14,486,741 (11.68%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 330,215,766
Intra-fragment Reads: 12,246,550 (9.88% / 13.85%)
Below MAPQ Threshold: 16,987,895 (13.70% / 19.22%)
Hi-C Contacts: 59,169,300 (47.72% / 66.93%)
 Ligation Motif Present: 9,629  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,898,435  (10.40% / 14.59%)
Intra-chromosomal: 46,270,865  (37.32% / 52.34%)
Short Range (<20Kb): 10,245,281  (8.26% / 11.59%)
Long Range (>20Kb): 36,025,551  (29.06% / 40.75%)